brain

retinotopy with freesurfer

Retinotopy analysis consists two parts, one on high resolution structural images (segmentation, inflation, cut, etc), the other on...
Xu Cui
2 min read

brain images: convert between different formats

For single file to single file conversion, you usually use mri_convert of freesurfer. For example mri_convert x.img y.nii Other options would be LONI Debabeler...
Xu Cui
1 min read

fslmerge: convert 3D ANALYZE to Nifti

/fs/quarry/cuixu/fsl/fslmerge -t f I_???.* On my computer, it doesn’t convert to .nii file; but to a single img/hdr pair. This method won’t...
Xu Cui
8 sec read