Visualization with freesurfer

21 sec read

Assume CON14 is our subject ID and it is inside directory $SUBJECTS_DIR.

After the display window and the control panel pops up, try playing with the menus and buttons.

tkmedit for volume
[code=”js”]
tkmedit CON14 rawavg.mgz
tkmedit CON14 rawavg.mgz lh.pial -aux-surface rh.pial
File > Load Segmentation > (for “Load Volume”) aparc+aseg.mgz (for “Load Color Table”) FreeSurferColorLUT.txt
[/code]

tksurfer for surface
[code=”js”]
tksurfer CON14 lh inflated
tksurfer CON14 lh pial
tksurfer CON14 rh pial
File > Label > Import Annotation > (browse to) lh.aparc.annot
[/code]

tkregister2 for check registration
[code=”js”]
tkregister2 –s CON14 –fstal
[/code]


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Xu Cui
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After fNIRS experiment …

Xu Cui
13 sec read

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