Visualization with freesurfer

21 sec read

Assume CON14 is our subject ID and it is inside directory $SUBJECTS_DIR.

After the display window and the control panel pops up, try playing with the menus and buttons.

tkmedit for volume

tkmedit CON14 rawavg.mgz
tkmedit CON14 rawavg.mgz lh.pial -aux-surface rh.pial
File > Load Segmentation > (for "Load Volume") aparc+aseg.mgz (for "Load Color Table") FreeSurferColorLUT.txt

tksurfer for surface

tksurfer CON14 lh inflated
tksurfer CON14 lh pial
tksurfer CON14 rh pial
File > Label > Import Annotation > (browse to) lh.aparc.annot

tkregister2 for check registration

tkregister2 --s CON14 --fstal

第二十二期 fNIRS Journal Club 通知 2021/08/28,10:00am

美国南卡罗来纳大学心理学系的符晓雪博士,将为大家讲解她刚刚发表在Neurophotonics上的一篇文章,用NIRS研究发育过程中头皮和大脑关系的变化。热烈欢迎大家参与讨论。 时间: 北京时间2021年8月28日上午10:00地点: https://zoom.com房间号: 845 7541 3964密码: 829803 符晓雪博士是南卡罗来纳大学心理学系的博士后研究员。 她在宾夕法尼亚州立大学获得发育心理学博士学位。 她的博士后工作重点是 fNIRS 和 ERP 的皮层源定位方法。 符博士要讲解的文章如下: Fu, Richards (2021) Investigating developmental changes in scalp-to-cortex...
Xu Cui
6 sec read

第二十一期 fNIRS Journal Club 视频

北京时间2021年7月31日11:00,华东师范大学心理与认知科学学院卢克龙博士,为大家讲解了他去年发表在NeuroImage上的一篇文章,利用行为实验方法及fNIRS等技术手段,探讨个体和团体创造活动的影响因素、动态过程,及背后的认知神经基础。 Lu K, Yu T, Hao N. Creating while taking turns, the choice to unlocking group creative potential. Neuroimage. 2020 Oct 1;219:117025. https://storkapp.me/pubpaper/32512127 Youtube:...
Xu Cui
11 sec read

The Dolphin Game: Tips and Tricks for Hyperscanning with…

Note: The following article is a guest post by Vanessa Reindl from University Hospital RWTH Aachen, Germany. She made our original hyperscanning game more...
Xu Cui
2 min read

Leave a Reply

Your email address will not be published. Required fields are marked *